A growing portfolio of synbio-CAD tools where I am actively contributing to the planning, design, development, deployment, test, analysis and validation:
Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows. BioRxiv.
RetroRules: A database of reaction rules for engineering biology. Nucleic Acids Research.
SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli. ACS Synth Biol.
Selenzyme: Enzyme Selection Tool for Pathway Design. Bioinformatics.
RetroPath2.0: A retrosynthesis workflow for metabolic engineers, Metab Eng.
SensiPath: Computer-aided Design of Sensing-enabling Metabolic Pathways. Nucleic Acids Research.
XTMS: Pathway Design in an eXTended Metabolic Space, Nucleic Acids Research.
Retropath: Automated Pipeline for Embedded Metabolic Circuits. ACS Synth Biol.
MolSig: Stereo Signature Molecular Descriptor. J Chem Info Model.
MetaHype: Metabolic Pathway Enumeration for Heterologous Production of Chemicals. BMC Sys Biol.
EcoliTox: Chemical Intracellular Toxicity Prediction in Bacteria. Biotechnol Bioeng.
Promis: Enzyme Promiscuity Prediction. Bioinformatics.