A growing portfolio of synbio-CAD tools where I am actively contributing to the planning, design, development, deployment, test, analysis and validation:
Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows.
RetroRules: A database of reaction rules for engineering biology, Nucleic Acids Research.
SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli, ACS Synth Bio.
Selenzyme: Enzyme Selection Tool for Pathway Design.
RetroPath2.0: A retrosynthesis workflow for metabolic engineers, Metab. Eng.
SensiPath: Computer-aided Design of Sensing-enabling Metabolic Pathways, Nucleic Acids Research.
XTMS: Pathway Design in an eXTended Metabolic Space, Nucleic Acids Research (Featured in Cell)
Retropath: Automated Pipeline for Embedded Metabolic Circuits, ACS Synth Biol.
MolSig: Stereo Signature Molecular Descriptor, J Chem Info Model.
MetaHype: Metabolic Pathway Enumeration for Heterologous Production of Chemicals.
EcoliTox: Chemical Intracellular Toxicity Prediction in Bacteria.
Promis: Enzyme Promiscuity Prediction.