Synthetic biology design tools

In collaboration with a several  research groups, we plan, design, develop, test, analyse, and validate a growing portfolio of tools and workflows for synthetic biology and metabolic engineering

Pathway design

Galaxy-SynBioCAD

Synthetic Biology Design Automation tools in Galaxy workflows.

MetaHype

Metabolic Pathway Enumeration for Heterologous Production of Chemicals.

XTMS

Pathway Design in an eXTended Metabolic Space.

Retropath

Automated Pipeline for Embedded Metabolic Circuits.

RetroPath2.0

A retrosynthesis workflow for metabolic engineers,

Protein design

Selenzyme

Enzyme Selection Tool for Pathway Design.

MolSig

Stereo Signature Molecular Descriptor.

EcoliTox

Chemical Intracellular Toxicity Prediction in Bacteria.

Molecular design

GetroRules

 A database of reaction rules for engineering biology.

SensiPath

Computer-aided Design of Sensing-enabling Metabolic Pathways.

Genetic design

SelProm

A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli.

Promis

Enzyme Promiscuity Prediction.