Tools

A growing portfolio of synbio-CAD tools where I am actively contributing to the planning, design, development, deployment, test, analysis and validation:


  • Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows.

  • RetroRules: A database of reaction rules for engineering biology, Nucleic Acids Research.

  • SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli, ACS Synth Bio.

  • Selenzyme: Enzyme Selection Tool for Pathway Design.

  • RetroPath2.0: A retrosynthesis workflow for metabolic engineers, Metab. Eng.

  • SensiPath: Computer-aided Design of Sensing-enabling Metabolic Pathways, Nucleic Acids Research.

  • XTMS: Pathway Design in an eXTended Metabolic Space, Nucleic Acids Research (Featured in Cell)

  • Retropath: Automated Pipeline for Embedded Metabolic Circuits, ACS Synth Biol.

  • MolSig: Stereo Signature Molecular Descriptor, J Chem Info Model.

  • MetaHype: Metabolic Pathway Enumeration for Heterologous Production of Chemicals.

  • EcoliTox: Chemical Intracellular Toxicity Prediction in Bacteria.

  • Promis: Enzyme Promiscuity Prediction.